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In 1964, atomic war wipes out humanity in the northern hemisphere; one American submarine finds temporary safe haven in Australia, where life-as-usual covers growing despair. In denial about the loss of his wife and children in the holocaust, American Captain Towers meets careworn but gorgeous Moira Davidson, who begins to fall for him. The sub returns after reconnaissance a month (or less) before the end; will Towers and Moira find comfort with each other?

A man wakes on the ceiling of his bedroom and breaks a lamp to alert his wife to his predicament. She puts on her heavy boots, unstraps herself out of her bed and uses a hook on a pole to drag him back down. The next day he goes to his job where he works as a deodorant tester, sniffing the armpits of exercising test subjects. On this day though, he faces an event that will change his life forever.

A massive underwater volcano erupts and puts a group of investigative scientists in danger. They are rescued by an atomic super submarine named The Alpha under the command of Captain McKenzie. The group is quickly taken to a vast underwater city known as Latitude Zero, a fantastic, Atlantean type utopia, a world beneath the ocean with its own sun. It is soon discovered that Captain McKenzie is at war with the evil Dr. Malic, a cruel scientist who wishes to rule mankind all the while conducting genetic experiments on humans and animals. Malic sends his agents to kidnap Dr. Okada, a human scientist who has created a serum that can immunize exposure to radiation.